Yes, by using MIDI program messages.
By default it uses MIDI channel 16, to avoid conflicts with usage within plugins.
If you want to customize this value you can setup a bank with the pedalboards you like, then set it to use whatever MIDI channel you prefer. (still with midi program messages).
Disconnect from the web interface (close the tab is enough), load any pedalboard from the bank you setup before using the MOD hardware and you're set.